Here is a list of all class members with links to the classes they belong to:
- c -
- CallbackRegistry() : CallbackRegistry
- canonicalize() : ASTNode
- ch : Token_t
- changeErrorSeverity() : XMLErrorLog
- checkCompatibility() : CobraToFbcConverter
- checkConsistency() : SBMLDocument, SBMLInternalValidator
- checkConsistencyWithStrictUnits() : SBMLDocument
- checkInternalConsistency() : SBMLDocument, SBMLInternalValidator
- checkL1Compatibility() : SBMLDocument, SBMLInternalValidator
- checkL2v1Compatibility() : SBMLDocument, SBMLInternalValidator
- checkL2v2Compatibility() : SBMLDocument, SBMLInternalValidator
- checkL2v3Compatibility() : SBMLDocument, SBMLInternalValidator
- checkL2v4Compatibility() : SBMLDocument, SBMLInternalValidator
- checkL2v5Compatibility() : SBMLDocument, SBMLInternalValidator
- checkL3v1Compatibility() : SBMLDocument, SBMLInternalValidator
- checkL3v2Compatibility() : SBMLDocument, SBMLInternalValidator
- checkTerm() : SBO
- clear() : ListOf, XMLAttributes, XMLNamespaces
- clearAdditionalDirs() : SBMLFileResolver
- clearAssociations() : Association
- clearAttributes() : XMLToken
- clearCallbacks() : CallbackRegistry
- clearDashes() : GraphicalPrimitive1D
- clearDefinitions() : DefinitionURLRegistry
- clearFailures() : SBMLValidator, Validator
- clearInstantiation() : Submodel
- clearLog() : XMLErrorLog
- clearNamespaces() : XMLToken
- clearReferencedElement() : SBaseRef
- clearReplacedElements() : CompSBasePlugin
- clone() : AlgebraicRule, AssignmentRule, Association, BindingSiteSpeciesType, BoundingBox, CobraToFbcConverter, ColorDefinition, Compartment, CompartmentGlyph, CompartmentReference, CompartmentType, CompExtension, CompFlatteningConverter, CompModelPlugin, CompSBasePlugin, CompSBMLDocumentPlugin, Constraint, ConversionOption, ConversionProperties, CubicBezier, Curve, CVTerm, Date, DefaultTerm, DefaultValues, Delay, Deletion, Dimensions, Ellipse, Event, EventAssignment, ExternalModelDefinition, FbcAnd, FbcAssociation, FbcExtension, FbcModelPlugin, FbcOr, FbcReactionPlugin, FbcSBasePlugin, FbcSBMLDocumentPlugin, FbcSpeciesPlugin, FbcToCobraConverter, FbcV1ToV2Converter, FbcV2ToV1Converter, FluxBound, FluxObjective, FunctionDefinition, FunctionTerm, GeneAssociation, GeneProduct, GeneProductAssociation, GeneProductRef, GeneralGlyph, GlobalRenderInformation, GlobalStyle, GradientBase, GradientStop, GraphicalObject, GraphicalPrimitive1D, GraphicalPrimitive2D, Group, GroupsExtension, GroupsModelPlugin, GroupsSBMLDocumentPlugin, Image, InitialAssignment, Input, InSpeciesTypeBond, IntraSpeciesReaction, KeyValuePair, KineticLaw, Layout, LayoutExtension, LayoutModelPlugin, LayoutSBMLDocumentPlugin, LayoutSpeciesReferencePlugin, LinearGradient, LineEnding, LineSegment, ListOf, ListOfColorDefinitions, ListOfCompartmentGlyphs, ListOfCompartmentReferences, ListOfCompartments, ListOfCompartmentTypes, ListOfConstraints, ListOfCurveElements, ListOfDeletions, ListOfDrawables, ListOfEventAssignments, ListOfEvents, ListOfExternalModelDefinitions, ListOfFbcAssociations, ListOfFluxBounds, ListOfFluxObjectives, ListOfFunctionDefinitions, ListOfFunctionTerms, ListOfGeneAssociations, ListOfGeneProducts, ListOfGlobalRenderInformation, ListOfGlobalStyles, ListOfGradientDefinitions, ListOfGradientStops, ListOfGraphicalObjects, ListOfGroups, ListOfInitialAssignments, ListOfInputs, ListOfInSpeciesTypeBonds, ListOfKeyValuePairs, ListOfLayouts, ListOfLineEndings, ListOfLineSegments, ListOfLocalParameters, ListOfLocalRenderInformation, ListOfLocalStyles, ListOfMembers, ListOfModelDefinitions, ListOfMultiSpeciesTypes, ListOfObjectives, ListOfOutputs, ListOfOutwardBindingSites, ListOfParameters, ListOfPorts, ListOfPossibleSpeciesFeatureValues, ListOfQualitativeSpecies, ListOfReactionGlyphs, ListOfReactions, ListOfReferenceGlyphs, ListOfReplacedElements, ListOfRules, ListOfSpecies, ListOfSpeciesFeatures, ListOfSpeciesFeatureTypes, ListOfSpeciesFeatureValues, ListOfSpeciesGlyphs, ListOfSpeciesReferenceGlyphs, ListOfSpeciesReferences, ListOfSpeciesTypeComponentIndexes, ListOfSpeciesTypeComponentMapInProducts, ListOfSpeciesTypeInstances, ListOfSpeciesTypes, ListOfSubmodels, ListOfTextGlyphs, ListOfTransitions, ListOfUnitDefinitions, ListOfUnits, ListOfUserDefinedConstraintComponents, ListOfUserDefinedConstraints, LocalParameter, LocalRenderInformation, LocalStyle, Member, ModelCreator, ModelDefinition, ModelHistory, ModifierSpeciesReference, MultiASTPlugin, MultiCompartmentPlugin, MultiExtension, MultiListOfReactionsPlugin, MultiModelPlugin, MultiSBMLDocumentPlugin, MultiSimpleSpeciesReferencePlugin, MultiSpeciesPlugin, MultiSpeciesReferencePlugin, MultiSpeciesType, Objective, Output, OutwardBindingSite, Parameter, Point, Polygon, Port, PossibleSpeciesFeatureValue, Priority, QualExtension, QualitativeSpecies, QualSBMLDocumentPlugin, RadialGradient, RateRule, Reaction, ReactionGlyph, Rectangle, ReferenceGlyph, RelAbsVector, RenderCubicBezier, RenderCurve, RenderExtension, RenderGraphicalObjectPlugin, RenderGroup, RenderInformationBase, RenderLayoutConverter, RenderLayoutPlugin, RenderListOfLayoutsPlugin, RenderPoint, RenderSBMLDocumentPlugin, ReplacedBy, ReplacedElement, Rule, SBase, SBaseExtensionPoint, SBasePlugin, SBasePluginCreator< SBasePluginType, SBMLExtensionType >, SBasePluginCreatorBase, SBaseRef, SBMLConverter, SBMLDocument, SBMLDocumentPlugin, SBMLExtension, SBMLExtensionNamespaces< SBMLExtensionType >, SBMLFileResolver, SBMLFunctionDefinitionConverter, SBMLIdConverter, SBMLInferUnitsConverter, SBMLInitialAssignmentConverter, SBMLInternalValidator, SBMLLevel1Version1Converter, SBMLLevelVersionConverter, SBMLLocalParameterConverter, SBMLNamespaces, SBMLRateOfConverter, SBMLReactionConverter, SBMLResolver, SBMLRuleConverter, SBMLStripPackageConverter, SBMLUnitsConverter, SBMLUri, SBMLValidator, Species, SpeciesFeature, SpeciesFeatureType, SpeciesFeatureValue, SpeciesGlyph, SpeciesReference, SpeciesReferenceGlyph, SpeciesType, SpeciesTypeComponentIndex, SpeciesTypeComponentMapInProduct, SpeciesTypeInstance, StoichiometryMath, Style, SubListOfSpeciesFeatures, Submodel, Text, TextGlyph, Transformation2D, Transformation, Transition, Trigger, Unit, UnitDefinition, UserDefinedConstraint, UserDefinedConstraintComponent, XMLAttributes, XMLNamespaces, XMLNode, XMLToken, XMLTriple
- CobraToFbcConverter() : CobraToFbcConverter
- ColorDefinition() : ColorDefinition
- combine() : UnitDefinition
- Compartment() : Compartment
- CompartmentGlyph() : CompartmentGlyph
- CompartmentReference() : CompartmentReference
- CompartmentType() : CompartmentType
- CompBase() : CompBase
- CompExtension() : CompExtension
- CompFlatteningConverter() : CompFlatteningConverter
- CompModelPlugin : CompBase, CompModelPlugin, ReplacedBy, ReplacedElement
- CompSBasePlugin() : CompSBasePlugin
- CompSBMLDocumentPlugin() : CompSBMLDocumentPlugin
- CompValidator() : CompValidator
- Constraint() : Constraint
- contains() : XMLErrorLog
- containsChild() : XMLInputStream
- containsUndeclaredUnits() : Delay, EventAssignment, InitialAssignment, KineticLaw, Rule, StoichiometryMath
- containsUri() : XMLNamespaces
- ConversionOption() : ConversionOption
- ConversionProperties() : ConversionProperties
- convert() : CobraToFbcConverter, CompFlatteningConverter, FbcToCobraConverter, FbcV1ToV2Converter, FbcV2ToV1Converter, RenderLayoutConverter, SBMLConverter, SBMLDocument, SBMLFunctionDefinitionConverter, SBMLIdConverter, SBMLInferUnitsConverter, SBMLInitialAssignmentConverter, SBMLLevel1Version1Converter, SBMLLevelVersionConverter, SBMLLocalParameterConverter, SBMLRateOfConverter, SBMLReactionConverter, SBMLRuleConverter, SBMLStripPackageConverter, SBMLUnitsConverter
- convertStringToXMLNode() : XMLNode
- convertTimeAndExtent() : Submodel
- convertToSI() : Unit, UnitDefinition
- convertXMLNodeToString() : XMLNode
- copyInformationToNestedLists() : GroupsModelPlugin
- countIf() : List
- createAdditionalGraphicalObject() : Layout
- createAnd() : Association, FbcAnd, FbcOr, GeneProductAssociation, ListOfFbcAssociations
- createAnnotation() : RDFAnnotationParser
- createAssociation() : GeneAssociation
- createBindingSiteSpeciesType() : MultiModelPlugin
- createBoundingBox() : LineEnding
- createColorDefinition() : ListOfColorDefinitions, RenderInformationBase
- createCompartmentGlyph() : Layout
- createCompartmentReference() : MultiCompartmentPlugin
- createCubicBezier() : Curve, GeneralGlyph, Layout, ListOfCurveElements, Polygon, ReactionGlyph, ReferenceGlyph, RenderCurve, SpeciesReferenceGlyph
- createCurve() : ListOfDrawables, RenderGroup
- createCVTerms() : RDFAnnotationParser
- createDefaultTerm() : ListOfFunctionTerms, Transition
- createDefaultValues() : ListOfGlobalRenderInformation, ListOfLocalRenderInformation
- createDelay() : Event
- createDeletion() : Submodel
- createEllipse() : ListOfDrawables, RenderGroup
- createEventAssignment() : Event
- createExternalModelDefinition() : CompSBMLDocumentPlugin
- createFluxBound() : FbcModelPlugin
- createFluxObjective() : ListOfFluxObjectives, Objective
- createFunctionTerm() : Transition
- createGene() : Association
- createGeneAssociation() : FbcModelPlugin
- createGeneProduct() : FbcModelPlugin, ListOfGeneProducts
- createGeneProductAssociation() : FbcReactionPlugin
- createGeneProductRef() : FbcAnd, FbcOr, GeneProductAssociation, ListOfFbcAssociations
- createGeneralGlyph() : Layout
- createGlobalRenderInformation() : ListOfGlobalRenderInformation, RenderListOfLayoutsPlugin
- createGlobalStyle() : GlobalRenderInformation, ListOfGlobalStyles
- createGradientStop() : GradientBase, ListOfGradientStops
- createGroup() : GroupsModelPlugin, LineEnding, ListOfDrawables, ListOfGroups, RenderGroup, Style
- createIdString() : LocalStyle
- createImage() : ListOfDrawables, RenderGroup
- createInput() : Transition
- createInSpeciesTypeBond() : MultiSpeciesType
- createIntraSpeciesReaction() : MultiModelPlugin
- createKeyValuePair() : FbcSBasePlugin, ListOfKeyValuePairs
- createKineticLaw() : Reaction
- createLayout() : LayoutModelPlugin
- createLinearGradient() : ListOfGradientDefinitions
- createLinearGradientDefinition() : RenderInformationBase
- createLineEnding() : ListOfDrawables, ListOfLineEndings, RenderGroup, RenderInformationBase
- createLineSegment() : Curve, GeneralGlyph, Layout, ReactionGlyph, ReferenceGlyph, SpeciesReferenceGlyph
- createLocalParameter() : KineticLaw
- createLocalRenderInformation() : ListOfLocalRenderInformation, RenderLayoutPlugin
- createLocalStyle() : ListOfLocalStyles, LocalRenderInformation
- createMember() : Group, ListOfMembers
- createModel() : SBMLDocument
- createModelDefinition() : CompSBMLDocumentPlugin
- createModifier() : Reaction
- createMultiSpeciesType() : MultiModelPlugin
- createObject() : Transition
- createObjective() : FbcModelPlugin, ListOfObjectives
- createOr() : Association, FbcAnd, FbcOr, GeneProductAssociation, ListOfFbcAssociations
- createOutput() : Transition
- createOutwardBindingSite() : MultiSpeciesPlugin
- createParameter() : KineticLaw
- createPlugin() : SBasePluginCreator< SBasePluginType, SBMLExtensionType >, SBasePluginCreatorBase
- createPoint() : Polygon, RenderCurve
- createPolygon() : ListOfDrawables, RenderGroup
- createPort() : CompModelPlugin
- createPossibleSpeciesFeatureValue() : SpeciesFeatureType
- createPriority() : Event
- createProduct() : Reaction
- createRadialGradient() : ListOfGradientDefinitions
- createRadialGradientDefinition() : RenderInformationBase
- createRDFAnnotation() : RDFAnnotationParser
- createRDFDescription() : RDFAnnotationParser
- createReactant() : Reaction
- createReactionGlyph() : Layout
- createRectangle() : ListOfDrawables, RenderGroup
- createReferenceGlyph() : GeneralGlyph
- createReplacedBy() : CompSBasePlugin
- createReplacedElement() : CompSBasePlugin
- createRoleString() : Style
- createSBaseRef() : SBaseRef
- createSpeciesFeature() : MultiSpeciesPlugin, SubListOfSpeciesFeatures
- createSpeciesFeatureType() : MultiSpeciesType
- createSpeciesFeatureValue() : SpeciesFeature
- createSpeciesGlyph() : Layout
- createSpeciesReferenceGlyph() : Layout, ReactionGlyph
- createSpeciesTypeComponentIndex() : MultiSpeciesType
- createSpeciesTypeComponentMapInProduct() : MultiSpeciesReferencePlugin
- createSpeciesTypeInstance() : MultiSpeciesType
- createStoichiometryMath() : SpeciesReference
- createStyle() : GlobalRenderInformation
- createSubListOfSpeciesFeatures() : MultiSpeciesPlugin
- createSubmodel() : CompModelPlugin
- createText() : ListOfDrawables, RenderGroup
- createTextGlyph() : Layout
- createTrigger() : Event
- createTypeString() : Style
- createUnit() : UnitDefinition
- createUserDefinedConstraint() : FbcModelPlugin, ListOfUserDefinedConstraints
- createUserDefinedConstraintComponent() : ListOfUserDefinedConstraintComponents, UserDefinedConstraint
- createValueString() : ColorDefinition
- CubicBezier() : CubicBezier
- Curve() : Curve
- CVTerm() : CVTerm