libpappsomspp
Library for mass spectrometry
filterobopsimodtermlabel.cpp
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1
2/*******************************************************************************
3 * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4 *
5 * This file is part of the PAPPSOms++ library.
6 *
7 * PAPPSOms++ is free software: you can redistribute it and/or modify
8 * it under the terms of the GNU General Public License as published by
9 * the Free Software Foundation, either version 3 of the License, or
10 * (at your option) any later version.
11 *
12 * PAPPSOms++ is distributed in the hope that it will be useful,
13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15 * GNU General Public License for more details.
16 *
17 * You should have received a copy of the GNU General Public License
18 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19 *
20 * Contributors:
21 * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
22 *implementation
23 ******************************************************************************/
24
25#include <QDebug>
27
28
29namespace pappso
30{
32 OboPsiModHandlerInterface &sink, const QString &label_search)
33 : m_sink(sink)
34{
35 m_labelMatch.setPattern(QString(label_search).replace("*", "(.*)"));
36 m_labelMatch.setPatternOptions(QRegularExpression::CaseInsensitiveOption);
37}
38
40{
41}
42
44 const FilterOboPsiModTermLabel &other)
45 : m_labelMatch(other.m_labelMatch), m_sink(other.m_sink)
46{
47}
48
49void
51{
52 // qDebug() << term._psi_mod_label << " " << term._psi_ms_label;
53 if(m_labelMatch.match(term.m_psiModLabel).hasMatch())
54 {
56 }
57 else if(m_labelMatch.match(term.m_psiMsLabel).hasMatch())
58 {
60 }
61}
62} // namespace pappso
FilterOboPsiModTermLabel(OboPsiModHandlerInterface &sink, const QString &label_search)
OboPsiModHandlerInterface & m_sink
void setOboPsiModTerm(const OboPsiModTerm &term) override
triggered function on each obo term when parsing obo file
virtual void setOboPsiModTerm(const OboPsiModTerm &term)=0
triggered function on each obo term when parsing obo file
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39