libpappsomspp
Library for mass spectrometry
peptidemodificatortee.cpp
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1
2/*******************************************************************************
3 * Copyright (c) 2016 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4 *
5 * This file is part of the PAPPSOms++ library.
6 *
7 * PAPPSOms++ is free software: you can redistribute it and/or modify
8 * it under the terms of the GNU General Public License as published by
9 * the Free Software Foundation, either version 3 of the License, or
10 * (at your option) any later version.
11 *
12 * PAPPSOms++ is distributed in the hope that it will be useful,
13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15 * GNU General Public License for more details.
16 *
17 * You should have received a copy of the GNU General Public License
18 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19 *
20 * Contributors:
21 * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
22 *implementation
23 ******************************************************************************/
24
26
27using namespace pappso;
28PeptideModificatorTee::PeptideModificatorTee()
29{
30}
31
33{
34 throw PappsoException(
35 QObject::tr("unable to copy PeptideModificatorTee object"));
37}
39{
40}
41
42void
44 PeptideModificatorInterface *p_peptide_mod)
45{
46 m_peptideModPtrList.push_back(p_peptide_mod);
47}
48
49
50void
51PeptideModificatorTee::setPeptideSp(std::int8_t sequence_database_id,
52 const ProteinSp &protein_sp,
53 bool is_decoy,
54 const PeptideSp &peptide_sp_original,
55 unsigned int start,
56 bool is_nter,
57 unsigned int missed_cleavage_number,
58 bool semi_enzyme)
59{
60
61 qDebug() << "PeptideModificatorTee::setPeptide begin";
62
63 for(auto p_peptide_mod : m_peptideModPtrList)
64 {
65 p_peptide_mod->setPeptideSp(sequence_database_id,
66 protein_sp,
67 is_decoy,
68 peptide_sp_original,
69 start,
70 is_nter,
71 missed_cleavage_number,
72 semi_enzyme);
73 }
74
75 qDebug() << "PeptideModificatorTee::setPeptide end";
76}
void addModificator(PeptideModificatorInterface *p_peptide_mod)
void setPeptideSp(std::int8_t sequence_database_id, const ProteinSp &protein_sp, bool is_decoy, const PeptideSp &peptide_sp_original, unsigned int start, bool is_nter, unsigned int missed_cleavage_number, bool semi_enzyme) override
function to give the products of modifications for a digested peptide
std::list< PeptideModificatorInterface * > m_peptideModPtrList
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
std::shared_ptr< const Peptide > PeptideSp
std::shared_ptr< const Protein > ProteinSp
shared pointer on a Protein object
Definition: protein.h:47